PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Home  BLAST  Prediction  RegMap  ATRM  Download  Help  About  Links
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016490511.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 250aa    MW: 26766.8 Da    PI: 8.0791
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016490511.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.001493115123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ykC+ Cgk F +   L  H  +H
  XP_016490511.1  93 YKCSVCGKGFGSYQALGGHKASH 115
                     9*********9999998888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.64E-992115No hitNo description
PfamPF139123.0E-1392117IPR007087Zinc finger, C2H2
SMARTSM003550.01993115IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.3E-493115IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.32593115IPR007087Zinc finger, C2H2
PROSITE patternPS00028095115IPR007087Zinc finger, C2H2
SuperFamilySSF576673.64E-9149176No hitNo description
PfamPF139122.9E-11153178IPR007087Zinc finger, C2H2
SMARTSM003551.8154176IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.058154176IPR007087Zinc finger, C2H2
PROSITE patternPS000280156176IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MALEALNSPT TTTPPTFQFE NNGQLRYLEN WTKGKRSKRP RSMERQPTEE EYLALCLIML  60
ARSGGSANQE QSLPQPPAPV MKIHAPPEEK MVYKCSVCGK GFGSYQALGG HKASHRKLVA  120
GGVGDDQSTT STTTNATGTT SSVNGNGNGS GKTHECSICH KCFPTGQALG GHKRCHYDGG  180
NSNVSVSASV GVTSSEGVGS TVSHRDFDLN IPALPDFWPG FGSGEEEVES PHPAKKSRLS  240
LPPKFELFRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1868990.0AB186899.1 Nicotiana tabacum ZFT1 mRNA for Cys2-His2 type zinc finger protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009621070.10.0PREDICTED: zinc finger protein ZAT10-like
RefseqXP_016490511.10.0PREDICTED: zinc finger protein ZAT10-like
SwissprotQ962892e-66ZAT10_ARATH; Zinc finger protein ZAT10
TrEMBLQ6JX071e-153Q6JX07_NICBE; Zinc finger protein PIF1
STRINGSolyc04g077980.1.11e-126(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7352495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.12e-53salt tolerance zinc finger